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Table 1 Different scenarios for simulations, comparing approaches to combining multiple biomarkers to construct personalised treatment recommendations

From: A comparison of approaches for combining predictive markers for personalised treatment recommendations

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Scenario

Data generation model

Variables in the prediction model

1.

Simple linear

Y = 3X1 + 2Z1 − 0.5Z3. lv2 − 1.5Z3. lv3

+A(2 + 2Z1 − 1.5Z2 − 3Z3. lv3) + e

All variables

2.

Linear with weak moderators

Y = 3X1 + 2Z1 − 0.5Z3. lv2 − 1.5Z3. lv3

+A(2 + 0.5Z1 − 0.5Z2 − 0.25Z3. lv3) + e

All variables

3.

Strong unobserved prognostic marker

Y = 12U1 + 3X1 + 2Z1 − 0.5Z3. lv2 − 1.5Z3. lv3

+A(2 + 2Z1 − 1.5Z2 − 3Z3. lv3) + e

Excluding U1

4.

Strong unobserved moderator variables

Y = 3X1 + 2Z1 − 0.5Z3. lv2 − 1.5Z3. lv3 + A(2 + 10U2 + 2Z1 − 1.5Z2 − 3Z3. lv3) + e

Excluding U2

5.

Misspecified prognostic part

Y = 3X1 + 2Z1 − 0.5Z3. lv2 − 1.5Z3. lv3 + 2X12 + 1.5U1X1 − 1.5X1M1 + 0.5X1Z1Z3. lv3

+A(2 + 2Z1 − 1.5Z2 − 3Z3. lv3) + e

All linear terms, excluding U1

6.

Misspecified moderator part

Y = 3X1 + 2Z1 − 0.5Z3. lv2 − 1.5Z3. lv3

+A(2 + 2Z1 − 1.5Z2 − 3Z3. lv3 + 2Z1Z2 − 1.5Z1Z2U2 + 0.5Z1Z2Z3. lv2) + e

All linear terms, excluding U2

7.

Non-linear model

Y = (3X1 + 2Z1 − 0.5Z3. lv2 − 1.5Z3. lv3)

+A(2 + 2Z1 − 1.5Z2 − 3Z3. lv3)/(−2Z1 + 1.5Z2 − 1.5Z3. lv3) + e

All as linear terms